Detailed information of deep learning profile BP000002.1

This page shows detailed deep learning-derived predictions and motifs for REST in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000002.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BGF
Model: BPNet

Contribution weight matrix (CWM)

A [ -9.01e-05 -8.05e-04 1.34e-02 3.32e-04 0.00e+00 -4.81e-05 -7.16e-05 1.12e-05 2.02e-04 0.00e+00 4.54e-02 7.86e-05 -2.24e-03 ]
C [ -2.51e-04 8.88e-04 1.61e-02 -5.39e-04 1.28e-01 6.50e-07 8.47e-05 -1.17e-04 9.93e-02 1.23e-01 -8.61e-04 1.26e-03 2.59e-02 ]
G [ 4.61e-02 3.63e-02 -1.89e-04 6.53e-02 0.00e+00 1.05e-04 9.43e-02 7.82e-05 -9.67e-06 -1.43e-05 1.90e-03 1.77e-02 4.31e-03 ]
T [ -3.77e-04 2.76e-05 1.06e-03 -1.48e-03 -1.96e-05 1.01e-01 -1.25e-04 9.54e-02 -2.46e-05 1.64e-06 -8.18e-04 -1.42e-04 -3.73e-04 ]

Frequency matrix

A [ 674 296 1782 594 8 57 86 175 90 35 3024 1132 615 ]
C [ 193 1000 1793 283 4849 46 422 62 4592 4732 538 912 1323 ]
G [ 3547 2946 181 3578 15 123 4342 239 31 45 724 1611 2263 ]
T [ 487 660 1145 446 29 4675 51 4425 188 89 615 1246 700 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000001.1 REST ENCSR000ATM K562 Homo sapiens
BP000004.1 REST ENCSR000BHM H1 Homo sapiens
BP000006.1 REST ENCSR000BJL HepG2 Homo sapiens
BP000007.1 REST ENCSR000BJO Panc1 Homo sapiens
BP000017.1 REST ENCSR000BMW K562 Homo sapiens
BP000024.1 REST ENCSR000BOT HepG2 Homo sapiens
BP000025.1 REST ENCSR000BOX PFSK-1 Homo sapiens
BP000027.1 REST ENCSR000BPK Panc1 Homo sapiens
BP000030.1 REST ENCSR000BQS GM12878 Homo sapiens
BP000032.1 REST ENCSR000BSP MCF-7 Homo sapiens
Showing 10 profiles of page 1 from 3 pages