Detailed information of deep learning profile BP000006.1

This page shows detailed deep learning-derived predictions and motifs for REST in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000006.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BJL
Model: BPNet

Contribution weight matrix (CWM)

A [ -2.17e-03 7.49e-04 -2.84e-03 -8.95e-05 9.10e-05 1.41e-01 -5.78e-05 1.49e-01 -1.91e-04 -2.37e-03 9.76e-04 -7.98e-04 -1.43e-03 ]
C [ 1.67e-02 1.87e-02 6.78e-03 3.64e-04 2.38e-04 9.20e-04 1.54e-01 4.79e-04 8.30e-05 9.63e-02 1.79e-04 8.61e-02 8.56e-02 ]
G [ 2.84e-02 7.70e-03 -9.93e-04 2.05e-01 1.87e-01 4.98e-04 5.01e-04 5.86e-04 2.07e-01 -3.84e-04 2.70e-02 1.38e-03 1.28e-04 ]
T [ -3.13e-03 -3.20e-03 5.43e-02 -3.60e-05 7.26e-04 8.29e-04 -1.58e-04 -1.67e-04 1.82e-04 -1.40e-03 2.53e-02 -7.20e-04 -4.27e-04 ]

Frequency matrix

A [ 213 611 236 18 22 1820 7 1930 11 189 380 173 132 ]
C [ 1048 665 268 5 4 74 1796 24 2 1454 38 1470 1559 ]
G [ 486 310 129 1950 1932 13 135 7 1958 111 657 278 27 ]
T [ 231 392 1345 5 20 71 40 17 7 224 903 57 260 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000442.1 REST ENCSR000BJJ SK-N-SH Homo sapiens
BP000459.1 REST ENCSR000BMN HeLa-S3 Homo sapiens
BP000564.1 REST ENCSR000BQP A549 Homo sapiens
BP000696.1 REST ENCSR000BJP PFSK-1 Homo sapiens
BP000728.1 REST ENCSR663WAR H1 Homo sapiens
BP000790.1 REST ENCSR000BTF HL-60 Homo sapiens
BP000875.1 REST ENCSR000BOZ SK-N-SH Homo sapiens
BP001141.1 REST ENCSR871KYB GM23338 Homo sapiens
Showing 8 profiles of page 3 from 3 pages