Detailed information of deep learning profile BP000025.1

This page shows detailed deep learning-derived predictions and motifs for REST in PFSK-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000025.1
Cell line/tissue: PFSK-1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BOX
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.05e-03 -7.75e-04 -5.88e-04 -2.37e-05 -6.89e-06 6.78e-02 -3.07e-06 8.97e-02 -5.27e-05 -2.04e-03 -6.59e-04 -6.47e-05 -9.84e-04 ]
C [ 2.35e-03 2.98e-02 1.12e-03 2.24e-06 3.31e-05 7.00e-04 9.42e-02 7.18e-05 1.16e-05 4.84e-02 -4.61e-05 3.60e-02 3.89e-02 ]
G [ 3.44e-02 6.53e-04 -2.84e-05 1.18e-01 1.20e-01 1.09e-04 2.07e-04 8.04e-05 1.21e-01 -3.30e-04 1.69e-02 2.79e-03 -1.67e-06 ]
T [ -1.78e-03 8.36e-04 4.02e-02 -4.21e-06 1.06e-04 -2.00e-04 -1.40e-04 1.46e-05 3.09e-05 -3.66e-05 8.15e-03 -1.09e-03 -1.12e-03 ]

Frequency matrix

A [ 1377 1748 921 74 139 8042 63 8854 78 1529 2067 1471 1198 ]
C [ 3027 3695 695 20 4 538 8080 16 12 5581 325 4953 5704 ]
G [ 3093 1305 619 8845 8795 59 560 23 8854 616 3291 1858 448 ]
T [ 1454 2203 6716 12 13 312 248 58 7 1225 3267 670 1601 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000442.1 REST ENCSR000BJJ SK-N-SH Homo sapiens
BP000459.1 REST ENCSR000BMN HeLa-S3 Homo sapiens
BP000564.1 REST ENCSR000BQP A549 Homo sapiens
BP000696.1 REST ENCSR000BJP PFSK-1 Homo sapiens
BP000728.1 REST ENCSR663WAR H1 Homo sapiens
BP000790.1 REST ENCSR000BTF HL-60 Homo sapiens
BP000875.1 REST ENCSR000BOZ SK-N-SH Homo sapiens
BP001141.1 REST ENCSR871KYB GM23338 Homo sapiens
Showing 8 profiles of page 3 from 3 pages