Detailed information of deep learning profile BP000030.1

This page shows detailed deep learning-derived predictions and motifs for REST in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000030.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BQS
Model: BPNet

Contribution weight matrix (CWM)

A [ -7.47e-04 -4.37e-04 -4.39e-04 6.36e-06 3.89e-05 8.67e-02 -2.88e-05 9.34e-02 -5.52e-05 -1.06e-03 2.45e-04 4.24e-04 -1.09e-04 ]
C [ 5.01e-03 1.72e-02 1.78e-03 1.92e-05 8.34e-07 3.54e-04 8.14e-02 9.95e-05 -7.41e-06 5.93e-02 -1.32e-04 3.05e-02 4.10e-02 ]
G [ 2.21e-02 1.07e-03 -3.02e-04 1.02e-01 1.00e-01 1.86e-05 -5.31e-05 0.00e+00 1.22e-01 -4.45e-04 1.57e-02 2.54e-03 -3.87e-05 ]
T [ -1.43e-03 1.34e-03 3.20e-02 8.59e-06 1.44e-04 -5.74e-05 -1.36e-04 -7.98e-05 0.00e+00 8.52e-04 1.18e-02 -2.02e-04 3.68e-04 ]

Frequency matrix

A [ 582 876 456 80 110 3385 77 3522 21 357 865 554 398 ]
C [ 1565 1197 567 25 5 136 3117 32 3 2655 101 2193 2617 ]
G [ 983 687 392 3462 3476 18 330 14 3593 187 1208 689 83 ]
T [ 489 859 2204 52 28 80 95 51 2 420 1445 183 521 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000001.1 REST ENCSR000ATM K562 Homo sapiens
BP000002.1 REST ENCSR000BGF GM12878 Homo sapiens
BP000004.1 REST ENCSR000BHM H1 Homo sapiens
BP000006.1 REST ENCSR000BJL HepG2 Homo sapiens
BP000007.1 REST ENCSR000BJO Panc1 Homo sapiens
BP000017.1 REST ENCSR000BMW K562 Homo sapiens
BP000024.1 REST ENCSR000BOT HepG2 Homo sapiens
BP000025.1 REST ENCSR000BOX PFSK-1 Homo sapiens
BP000027.1 REST ENCSR000BPK Panc1 Homo sapiens
BP000032.1 REST ENCSR000BSP MCF-7 Homo sapiens
Showing 10 profiles of page 1 from 3 pages