Detailed information of deep learning profile BP000038.1

This page shows detailed deep learning-derived predictions and motifs for REST in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000038.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BVI
Model: BPNet

Contribution weight matrix (CWM)

A [ -2.03e-03 4.08e-05 -6.73e-04 0.00e+00 -6.50e-06 1.28e-01 -3.06e-05 1.43e-01 2.02e-05 -1.51e-03 1.81e-03 -1.32e-04 -4.93e-04 ]
C [ 1.35e-02 1.96e-02 1.73e-03 1.19e-04 -2.43e-06 -3.30e-05 1.34e-01 5.98e-04 1.26e-04 8.03e-02 -1.77e-05 7.21e-02 7.33e-02 ]
G [ 2.35e-02 1.61e-03 -5.90e-04 1.84e-01 1.55e-01 8.65e-05 4.21e-04 9.39e-05 1.95e-01 6.47e-04 1.30e-02 1.18e-03 -3.87e-05 ]
T [ -2.21e-03 -1.81e-03 5.40e-02 -1.46e-05 1.38e-04 2.39e-04 -3.69e-05 1.03e-04 2.09e-04 -3.38e-04 2.84e-02 -7.33e-04 8.95e-04 ]

Frequency matrix

A [ 268 739 258 20 27 2178 16 2301 16 242 477 247 208 ]
C [ 1246 690 286 10 10 69 2087 9 2 1648 32 1698 1765 ]
G [ 521 329 168 2287 2266 22 160 2 2309 119 723 303 27 ]
T [ 298 575 1621 16 30 64 70 21 6 324 1101 85 333 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000032.1 REST ENCSR000BSP MCF-7 Homo sapiens
BP000035.1 REST ENCSR000BTV neural cell Homo sapiens
BP000036.1 REST ENCSR000BUP Panc1 Homo sapiens
BP000037.1 REST ENCSR000BUU Ishikawa Homo sapiens
BP000063.1 REST ENCSR054JMQ K562 Homo sapiens
BP000075.1 REST ENCSR137ZMQ K562 Homo sapiens
BP000179.1 REST ENCSR893QWP liver Homo sapiens
BP000180.1 REST ENCSR896UBV HEK293 Homo sapiens
BP000343.1 REST ENCSR892DRK A549 Homo sapiens
BP000383.1 REST ENCSR867WPH liver Homo sapiens
Showing 10 profiles of page 2 from 3 pages