Detailed information of deep learning profile BP000038.1

This page shows detailed deep learning-derived predictions and motifs for REST in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000038.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BVI
Model: BPNet

Contribution weight matrix (CWM)

A [ -2.03e-03 4.08e-05 -6.73e-04 0.00e+00 -6.50e-06 1.28e-01 -3.06e-05 1.43e-01 2.02e-05 -1.51e-03 1.81e-03 -1.32e-04 -4.93e-04 ]
C [ 1.35e-02 1.96e-02 1.73e-03 1.19e-04 -2.43e-06 -3.30e-05 1.34e-01 5.98e-04 1.26e-04 8.03e-02 -1.77e-05 7.21e-02 7.33e-02 ]
G [ 2.35e-02 1.61e-03 -5.90e-04 1.84e-01 1.55e-01 8.65e-05 4.21e-04 9.39e-05 1.95e-01 6.47e-04 1.30e-02 1.18e-03 -3.87e-05 ]
T [ -2.21e-03 -1.81e-03 5.40e-02 -1.46e-05 1.38e-04 2.39e-04 -3.69e-05 1.03e-04 2.09e-04 -3.38e-04 2.84e-02 -7.33e-04 8.95e-04 ]

Frequency matrix

A [ 268 739 258 20 27 2178 16 2301 16 242 477 247 208 ]
C [ 1246 690 286 10 10 69 2087 9 2 1648 32 1698 1765 ]
G [ 521 329 168 2287 2266 22 160 2 2309 119 723 303 27 ]
T [ 298 575 1621 16 30 64 70 21 6 324 1101 85 333 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000442.1 REST ENCSR000BJJ SK-N-SH Homo sapiens
BP000459.1 REST ENCSR000BMN HeLa-S3 Homo sapiens
BP000564.1 REST ENCSR000BQP A549 Homo sapiens
BP000696.1 REST ENCSR000BJP PFSK-1 Homo sapiens
BP000728.1 REST ENCSR663WAR H1 Homo sapiens
BP000790.1 REST ENCSR000BTF HL-60 Homo sapiens
BP000875.1 REST ENCSR000BOZ SK-N-SH Homo sapiens
BP001141.1 REST ENCSR871KYB GM23338 Homo sapiens
Showing 8 profiles of page 3 from 3 pages