Detailed information of deep learning profile BP000038.1

This page shows detailed deep learning-derived predictions and motifs for REST in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000038.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BVI
Model: BPNet

Contribution weight matrix (CWM)

A [ 8.95e-04 -7.33e-04 2.84e-02 -3.38e-04 2.09e-04 1.03e-04 -3.69e-05 2.39e-04 1.38e-04 -1.46e-05 5.40e-02 -1.81e-03 -2.21e-03 ]
C [ -3.87e-05 1.18e-03 1.30e-02 6.47e-04 1.95e-01 9.39e-05 4.21e-04 8.65e-05 1.55e-01 1.84e-01 -5.90e-04 1.61e-03 2.35e-02 ]
G [ 7.33e-02 7.21e-02 -1.77e-05 8.03e-02 1.26e-04 5.98e-04 1.34e-01 -3.30e-05 -2.43e-06 1.19e-04 1.73e-03 1.96e-02 1.35e-02 ]
T [ -4.93e-04 -1.32e-04 1.81e-03 -1.51e-03 2.02e-05 1.43e-01 -3.06e-05 1.28e-01 -6.50e-06 0.00e+00 -6.73e-04 4.08e-05 -2.03e-03 ]

Frequency matrix

A [ 333 85 1101 324 6 21 70 64 30 16 1621 575 298 ]
C [ 27 303 723 119 2309 2 160 22 2266 2287 168 329 521 ]
G [ 1765 1698 32 1648 2 9 2087 69 10 10 286 690 1246 ]
T [ 208 247 477 242 16 2301 16 2178 27 20 258 739 268 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000001.1 REST ENCSR000ATM K562 Homo sapiens
BP000002.1 REST ENCSR000BGF GM12878 Homo sapiens
BP000004.1 REST ENCSR000BHM H1 Homo sapiens
BP000006.1 REST ENCSR000BJL HepG2 Homo sapiens
BP000007.1 REST ENCSR000BJO Panc1 Homo sapiens
BP000017.1 REST ENCSR000BMW K562 Homo sapiens
BP000024.1 REST ENCSR000BOT HepG2 Homo sapiens
BP000025.1 REST ENCSR000BOX PFSK-1 Homo sapiens
BP000027.1 REST ENCSR000BPK Panc1 Homo sapiens
BP000030.1 REST ENCSR000BQS GM12878 Homo sapiens
Showing 10 profiles of page 1 from 3 pages