Detailed information of deep learning profile BP000038.1

This page shows detailed deep learning-derived predictions and motifs for REST in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000038.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR000BVI
Model: BPNet

Contribution weight matrix (CWM)

A [ -2.03e-03 4.08e-05 -6.73e-04 0.00e+00 -6.50e-06 1.28e-01 -3.06e-05 1.43e-01 2.02e-05 -1.51e-03 1.81e-03 -1.32e-04 -4.93e-04 ]
C [ 1.35e-02 1.96e-02 1.73e-03 1.19e-04 -2.43e-06 -3.30e-05 1.34e-01 5.98e-04 1.26e-04 8.03e-02 -1.77e-05 7.21e-02 7.33e-02 ]
G [ 2.35e-02 1.61e-03 -5.90e-04 1.84e-01 1.55e-01 8.65e-05 4.21e-04 9.39e-05 1.95e-01 6.47e-04 1.30e-02 1.18e-03 -3.87e-05 ]
T [ -2.21e-03 -1.81e-03 5.40e-02 -1.46e-05 1.38e-04 2.39e-04 -3.69e-05 1.03e-04 2.09e-04 -3.38e-04 2.84e-02 -7.33e-04 8.95e-04 ]

Frequency matrix

A [ 268 739 258 20 27 2178 16 2301 16 242 477 247 208 ]
C [ 1246 690 286 10 10 69 2087 9 2 1648 32 1698 1765 ]
G [ 521 329 168 2287 2266 22 160 2 2309 119 723 303 27 ]
T [ 298 575 1621 16 30 64 70 21 6 324 1101 85 333 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000001.1 REST ENCSR000ATM K562 Homo sapiens
BP000002.1 REST ENCSR000BGF GM12878 Homo sapiens
BP000004.1 REST ENCSR000BHM H1 Homo sapiens
BP000006.1 REST ENCSR000BJL HepG2 Homo sapiens
BP000007.1 REST ENCSR000BJO Panc1 Homo sapiens
BP000017.1 REST ENCSR000BMW K562 Homo sapiens
BP000024.1 REST ENCSR000BOT HepG2 Homo sapiens
BP000025.1 REST ENCSR000BOX PFSK-1 Homo sapiens
BP000027.1 REST ENCSR000BPK Panc1 Homo sapiens
BP000030.1 REST ENCSR000BQS GM12878 Homo sapiens
Showing 10 profiles of page 1 from 3 pages