Detailed information of deep learning profile BP000063.1

This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000063.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR054JMQ
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.49e-05 -4.32e-04 1.10e-02 2.05e-04 0.00e+00 7.26e-05 8.93e-06 4.71e-04 1.77e-04 4.80e-06 2.11e-02 3.22e-04 -2.16e-04 1.51e-03 -5.41e-04 1.48e-04 -1.13e-03 ]
C [ -9.26e-05 6.11e-04 9.01e-03 -1.06e-04 6.75e-02 2.98e-05 5.53e-07 1.33e-04 6.27e-02 6.49e-02 -2.04e-04 1.94e-03 6.15e-03 8.05e-04 5.98e-03 4.79e-03 9.35e-03 ]
G [ 2.51e-02 2.47e-02 -1.48e-05 3.65e-02 3.55e-06 1.55e-04 4.82e-02 4.43e-05 7.25e-05 1.50e-06 2.25e-03 8.22e-03 6.49e-03 1.53e-02 2.37e-03 2.49e-03 3.96e-03 ]
T [ -1.70e-04 2.01e-04 1.13e-03 -3.47e-04 6.76e-05 5.66e-02 -1.59e-05 4.96e-02 -4.71e-05 -5.62e-05 -2.67e-04 7.56e-04 1.41e-03 1.28e-05 1.17e-02 9.21e-04 1.30e-03 ]

Frequency matrix

A [ 289 110 909 186 0 15 66 125 24 3 1309 429 313 401 295 340 274 ]
C [ 97 429 782 90 2178 31 178 22 2141 2160 251 510 672 496 652 831 768 ]
G [ 1633 1377 33 1743 5 10 1928 116 2 23 397 816 824 921 468 607 625 ]
T [ 185 288 480 185 21 2148 32 1941 37 18 247 449 395 386 789 426 537 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000032.1 REST ENCSR000BSP MCF-7 Homo sapiens
BP000035.1 REST ENCSR000BTV neural cell Homo sapiens
BP000036.1 REST ENCSR000BUP Panc1 Homo sapiens
BP000037.1 REST ENCSR000BUU Ishikawa Homo sapiens
BP000038.1 REST ENCSR000BVI HCT116 Homo sapiens
BP000075.1 REST ENCSR137ZMQ K562 Homo sapiens
BP000179.1 REST ENCSR893QWP liver Homo sapiens
BP000180.1 REST ENCSR896UBV HEK293 Homo sapiens
BP000343.1 REST ENCSR892DRK A549 Homo sapiens
BP000383.1 REST ENCSR867WPH liver Homo sapiens
Showing 10 profiles of page 2 from 3 pages