Detailed information of deep learning profile BP000116.1

This page shows detailed deep learning-derived predictions and motifs for ZSCAN29 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZSCAN29
Model ID: BP000116.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Best Match(es): MA1602.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8IWY8  
Source: ENCSR412YGM
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.13e-04 9.90e-04 -1.79e-04 -1.45e-03 -2.56e-04 -3.90e-05 3.87e-03 -1.22e-05 3.79e-02 5.56e-05 3.85e-02 -2.92e-06 1.92e-04 -4.74e-04 ]
C [ -2.45e-04 6.44e-04 1.80e-02 6.12e-03 -2.63e-04 9.54e-03 -1.13e-04 -6.78e-06 5.76e-05 -5.12e-05 -4.49e-05 4.20e-02 8.46e-04 7.60e-03 ]
G [ 9.71e-03 8.95e-04 -2.46e-04 2.85e-04 3.26e-02 -2.05e-05 1.79e-02 -5.28e-05 -5.91e-04 2.47e-02 -1.10e-04 -2.38e-05 6.89e-03 1.83e-03 ]
T [ -2.82e-04 -8.48e-05 -1.43e-04 8.54e-04 -4.66e-04 1.50e-02 -7.04e-05 5.07e-02 1.97e-05 2.03e-04 -7.14e-06 5.27e-05 -9.72e-04 -1.08e-03 ]

Frequency matrix

A [ 385 540 262 404 148 74 516 12 1871 107 1930 40 650 446 ]
C [ 338 590 1356 658 125 723 309 8 115 207 102 2014 494 732 ]
G [ 1034 621 204 379 1735 84 1234 39 128 1623 79 18 664 635 ]
T [ 386 392 321 702 135 1262 84 2084 29 206 32 71 335 330 ]

2 profiles found for the same TF (ZSCAN29) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000084.1 ZSCAN29 ENCSR175SZH K562 Homo sapiens
BP000147.1 ZSCAN29 ENCSR635EXI K562 Homo sapiens
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