Detailed information of deep learning profile BP000116.1

This page shows detailed deep learning-derived predictions and motifs for ZSCAN29 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZSCAN29
Model ID: BP000116.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Best Match(es): MA1602.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8IWY8  
Source: ENCSR412YGM
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.08e-03 -9.72e-04 5.27e-05 -7.14e-06 2.03e-04 1.97e-05 5.07e-02 -7.04e-05 1.50e-02 -4.66e-04 8.54e-04 -1.43e-04 -8.48e-05 -2.82e-04 ]
C [ 1.83e-03 6.89e-03 -2.38e-05 -1.10e-04 2.47e-02 -5.91e-04 -5.28e-05 1.79e-02 -2.05e-05 3.26e-02 2.85e-04 -2.46e-04 8.95e-04 9.71e-03 ]
G [ 7.60e-03 8.46e-04 4.20e-02 -4.49e-05 -5.12e-05 5.76e-05 -6.78e-06 -1.13e-04 9.54e-03 -2.63e-04 6.12e-03 1.80e-02 6.44e-04 -2.45e-04 ]
T [ -4.74e-04 1.92e-04 -2.92e-06 3.85e-02 5.56e-05 3.79e-02 -1.22e-05 3.87e-03 -3.90e-05 -2.56e-04 -1.45e-03 -1.79e-04 9.90e-04 1.13e-04 ]

Frequency matrix

A [ 330 335 71 32 206 29 2084 84 1262 135 702 321 392 386 ]
C [ 635 664 18 79 1623 128 39 1234 84 1735 379 204 621 1034 ]
G [ 732 494 2014 102 207 115 8 309 723 125 658 1356 590 338 ]
T [ 446 650 40 1930 107 1871 12 516 74 148 404 262 540 385 ]

2 profiles found for the same TF (ZSCAN29) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000084.1 ZSCAN29 ENCSR175SZH K562 Homo sapiens
BP000147.1 ZSCAN29 ENCSR635EXI K562 Homo sapiens
Showing 2 profiles of page 1 from 1 pages
  • 1 (current)