Detailed information of deep learning profile BP000133.1

This page shows detailed deep learning-derived predictions and motifs for ZNF490 in HepG2 using a single trained BPNet model.

Model details

Name: ZNF490
Model ID: BP000133.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Best Match(es): MA2495.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9ULM2  
Source: ENCSR542PZA
Model: BPNet

Contribution weight matrix (CWM)

A [ -5.79e-04 -5.91e-04 -8.90e-05 -1.69e-04 -5.27e-04 -6.23e-04 2.40e-04 -2.41e-04 -4.61e-05 -1.27e-04 8.08e-05 -1.19e-05 -1.31e-05 -1.93e-05 -3.35e-04 -4.93e-05 1.08e-04 1.14e-03 5.16e-05 ]
C [ 1.14e-02 4.19e-03 5.59e-05 1.99e-04 7.26e-04 1.41e-04 -8.58e-05 3.27e-04 -1.12e-03 4.42e-06 1.97e-05 3.57e-02 7.69e-05 1.83e-05 1.57e-02 1.37e-03 -3.93e-04 -1.63e-03 8.83e-03 ]
G [ -2.41e-04 3.73e-04 -5.06e-04 1.61e-03 4.03e-03 1.76e-03 2.79e-02 -3.55e-04 -6.53e-04 3.67e-05 4.35e-02 -5.08e-05 -3.60e-05 4.53e-02 -1.63e-04 -1.63e-04 1.25e-03 3.05e-03 -7.53e-04 ]
T [ -6.92e-04 -1.21e-04 4.65e-03 -1.51e-04 2.14e-04 6.18e-03 -2.16e-04 2.76e-02 1.15e-02 3.48e-02 -2.78e-04 1.25e-03 2.94e-02 -7.18e-05 1.27e-03 1.15e-02 7.06e-03 -7.62e-04 2.66e-05 ]

Frequency matrix

A [ 569 545 991 922 557 716 679 113 629 142 37 20 161 43 350 537 461 731 591 ]
C [ 1691 1538 788 679 846 295 193 347 706 54 53 3077 109 76 1810 1192 472 755 1705 ]
G [ 519 554 543 986 1150 1132 2205 425 529 36 3334 35 68 3235 269 275 782 802 446 ]
T [ 714 856 1171 906 940 1350 416 2608 1629 3261 69 361 3155 139 1064 1489 1778 1205 751 ]