Detailed information of deep learning profile BP000187.1

This page shows detailed deep learning-derived predictions and motifs for PRDM1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PRDM1
Model ID: BP000187.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Best Match(es): MA0508.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O75626  
Source: ENCSR977FEF
Model: BPNet

Contribution weight matrix (CWM)

A [ 7.39e-05 3.43e-02 -1.40e-05 1.66e-05 -1.69e-05 7.79e-06 4.28e-06 1.20e-02 -1.98e-04 -1.13e-04 -3.68e-04 2.58e-04 -3.68e-04 ]
C [ 8.70e-03 9.37e-06 5.02e-02 -1.84e-05 4.20e-04 1.02e-06 5.46e-02 -1.11e-03 3.45e-02 7.20e-04 -1.93e-04 -5.15e-04 7.43e-03 ]
G [ -5.75e-04 5.63e-04 -3.74e-06 7.65e-06 -3.06e-06 -1.23e-05 1.61e-06 1.97e-04 -1.30e-04 -7.40e-06 1.82e-04 3.61e-04 -5.44e-05 ]
T [ 8.83e-05 -2.44e-05 2.49e-07 4.55e-02 4.11e-02 4.54e-02 1.79e-04 -6.22e-05 -2.92e-04 2.93e-02 1.54e-02 9.99e-03 2.80e-03 ]

Frequency matrix

A [ 2806 11499 197 47 32 88 5 5826 1531 1357 2181 2654 2550 ]
C [ 7339 1971 14415 61 1211 20 14171 3771 10294 3032 2658 3162 5134 ]
G [ 1584 1413 218 15 36 110 7 762 796 591 2201 2402 2118 ]
T [ 3226 71 124 14831 13675 14736 771 4596 2333 9974 7914 6736 5152 ]

2 profiles found for the same TF (PRDM1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000069.1 PRDM1 ENCSR098YLE HEK293 Homo sapiens
BP000973.1 PRDM1 ENCSR000ECY HeLa-S3 Homo sapiens
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