Detailed information of deep learning profile BP000204.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000204.1
Cell line/tissue: liver
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR350ORK
Model: BPNet

Contribution weight matrix (CWM)

A [ 2.80e-02 -8.88e-05 3.66e-04 -4.82e-06 3.53e-05 -8.75e-07 -5.06e-06 -3.54e-04 -3.93e-04 ]
C [ -4.59e-04 2.74e-02 -6.41e-06 -1.01e-06 1.05e-01 1.22e-01 4.20e-05 -2.04e-04 5.16e-03 ]
G [ 2.08e-03 1.03e-04 3.07e-05 1.77e-05 6.20e-06 6.16e-06 7.26e-02 3.75e-02 -1.66e-03 ]
T [ -1.15e-03 3.06e-03 6.57e-02 9.46e-02 -9.10e-07 -2.31e-06 1.24e-03 4.11e-05 8.84e-03 ]

Frequency matrix

A [ 9832 1320 2027 545 378 3 117 1097 2796 ]
C [ 3801 12403 932 1194 22423 23441 1147 5438 8146 ]
G [ 6959 3983 1164 517 186 35 16680 13988 4743 ]
T [ 2889 5774 19358 21225 494 2 5537 2958 7796 ]

Other motif patterns

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000323.1 GABPA ENCSR269TNX HepG2 Homo sapiens
BP000347.1 GABPA ENCSR331HPA GM12878 Homo sapiens
BP000391.1 GABPA ENCSR038RXU MCF-7 Homo sapiens
BP000406.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
BP000840.1 GABPA ENCSR038GMB liver Homo sapiens
Showing 10 profiles of page 1 from 2 pages