Detailed information of deep learning profile BP000204.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000204.1
Cell line/tissue: liver
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR350ORK
Model: BPNet

Contribution weight matrix (CWM)

A [ 8.84e-03 4.11e-05 1.24e-03 -2.31e-06 -9.10e-07 9.46e-02 6.57e-02 3.06e-03 -1.15e-03 ]
C [ -1.66e-03 3.75e-02 7.26e-02 6.16e-06 6.20e-06 1.77e-05 3.07e-05 1.03e-04 2.08e-03 ]
G [ 5.16e-03 -2.04e-04 4.20e-05 1.22e-01 1.05e-01 -1.01e-06 -6.41e-06 2.74e-02 -4.59e-04 ]
T [ -3.93e-04 -3.54e-04 -5.06e-06 -8.75e-07 3.53e-05 -4.82e-06 3.66e-04 -8.88e-05 2.80e-02 ]

Frequency matrix

A [ 7796 2958 5537 2 494 21225 19358 5774 2889 ]
C [ 4743 13988 16680 35 186 517 1164 3983 6959 ]
G [ 8146 5438 1147 23441 22423 1194 932 12403 3801 ]
T [ 2796 1097 117 3 378 545 2027 1320 9832 ]

Other motif patterns

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000323.1 GABPA ENCSR269TNX HepG2 Homo sapiens
BP000347.1 GABPA ENCSR331HPA GM12878 Homo sapiens
BP000391.1 GABPA ENCSR038RXU MCF-7 Homo sapiens
BP000406.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
BP000840.1 GABPA ENCSR038GMB liver Homo sapiens
Showing 10 profiles of page 1 from 2 pages