Detailed information of deep learning profile BP000232.1

This page shows detailed deep learning-derived predictions and motifs for RUNX3 in GM12878 using a single trained BPNet model.

Model details

Name: RUNX3
Model ID: BP000232.1
Cell line/tissue: GM12878
Class: Runt domain factors
Family: Runt-related factors
Best Match(es): MA0684.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13761  
Source: ENCSR000BRI
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.51e-02 3.38e-02 1.50e-05 -5.40e-07 1.72e-02 -4.85e-05 2.02e-02 ]
C [ -2.62e-04 4.78e-04 8.30e-02 8.89e-02 6.20e-06 5.64e-02 -1.96e-05 ]
G [ 2.23e-03 5.65e-04 2.22e-06 1.76e-06 3.15e-03 3.44e-05 1.07e-04 ]
T [ -8.26e-04 -9.39e-07 1.30e-05 1.66e-06 -8.97e-04 -7.53e-05 -8.22e-04 ]

Frequency matrix

A [ 162824 217135 228 52 216488 23333 212475 ]
C [ 54539 60200 340789 341129 29623 294993 44870 ]
G [ 75788 52576 61 3 50831 11833 31517 ]
T [ 48122 11363 195 89 44331 11114 52411 ]