Detailed information of deep learning profile BP000233.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000233.1
Cell line/tissue: MCF-7
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR126YEB
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.22e-03 2.00e-02 5.14e-03 1.41e-03 -6.97e-06 4.85e-02 5.14e-02 7.30e-02 2.04e-07 5.62e-02 ]
C [ -2.72e-04 -7.62e-04 -1.35e-04 -2.49e-05 7.75e-05 7.15e-03 9.66e-04 -2.58e-06 4.36e-02 -6.03e-05 ]
G [ -3.97e-04 3.35e-03 -1.34e-03 4.90e-02 5.52e-06 1.53e-06 6.66e-06 -1.20e-05 -3.70e-05 -3.95e-05 ]
T [ 1.94e-02 -1.12e-03 1.00e-02 -1.81e-05 7.32e-02 -5.13e-06 -5.37e-05 9.94e-06 1.42e-02 -1.52e-04 ]

Frequency matrix

A [ 28236 40595 30583 13361 201 55287 62383 71798 40 67859 ]
C [ 5800 7623 1700 918 439 16472 8630 155 48718 1054 ]
G [ 3698 16259 12676 55933 41 456 629 575 842 984 ]
T [ 35139 8396 27914 2662 72192 658 1231 345 23273 2976 ]

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages