Detailed information of deep learning profile BP000241.1

This page shows detailed deep learning-derived predictions and motifs for CLOCK in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP000241.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
Best Match(es): MA0819.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR699YFX
Model: BPNet

Contribution weight matrix (CWM)

A [ 5.77e-04 6.84e-05 3.32e-02 -1.09e-06 4.58e-05 -6.01e-05 0.00e+00 ]
C [ -6.83e-04 4.02e-02 -3.71e-06 4.57e-02 -1.04e-05 1.84e-04 9.87e-06 ]
G [ 1.20e-03 1.38e-05 3.85e-05 -4.82e-05 4.35e-02 -5.99e-05 3.75e-02 ]
T [ 6.90e-03 2.97e-06 -2.20e-05 2.97e-05 -1.07e-06 2.95e-02 4.38e-04 ]

Frequency matrix

A [ 3050 789 13287 12 1455 692 132 ]
C [ 2925 13149 281 13436 880 753 222 ]
G [ 4299 199 351 287 11839 625 12787 ]
T [ 3962 98 316 500 61 12165 1095 ]

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000583.1 CLOCK ENCSR934JDG MCF-7 Homo sapiens
BP000847.1 CLOCK ENCSR228OQM K562 Homo sapiens
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