Detailed information of deep learning profile BP000241.1

This page shows detailed deep learning-derived predictions and motifs for CLOCK in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CLOCK
Model ID: BP000241.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: PAS domain factors
Best Match(es): MA0819.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O15516  
Source: ENCSR699YFX
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.38e-04 2.95e-02 -1.07e-06 2.97e-05 -2.20e-05 2.97e-06 6.90e-03 ]
C [ 3.75e-02 -5.99e-05 4.35e-02 -4.82e-05 3.85e-05 1.38e-05 1.20e-03 ]
G [ 9.87e-06 1.84e-04 -1.04e-05 4.57e-02 -3.71e-06 4.02e-02 -6.83e-04 ]
T [ 0.00e+00 -6.01e-05 4.58e-05 -1.09e-06 3.32e-02 6.84e-05 5.77e-04 ]

Frequency matrix

A [ 1095 12165 61 500 316 98 3962 ]
C [ 12787 625 11839 287 351 199 4299 ]
G [ 222 753 880 13436 281 13149 2925 ]
T [ 132 692 1455 12 13287 789 3050 ]

2 profiles found for the same TF (CLOCK) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000583.1 CLOCK ENCSR934JDG MCF-7 Homo sapiens
BP000847.1 CLOCK ENCSR228OQM K562 Homo sapiens
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