Detailed information of deep learning profile BP000242.1

This page shows detailed deep learning-derived predictions and motifs for NFIC in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP000242.1
Cell line/tissue: HepG2
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
Best Match(es): MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR000BQX
Model: BPNet

Contribution weight matrix (CWM)

A [ -5.20e-04 -1.59e-04 0.00e+00 2.22e-05 2.21e-03 2.53e-03 3.92e-04 1.15e-03 1.84e-04 4.52e-04 -1.00e-05 -6.24e-06 0.00e+00 2.35e-02 1.67e-02 ]
C [ 3.09e-03 -1.80e-05 0.00e+00 0.00e+00 1.64e-02 -1.86e-04 -1.77e-04 -1.61e-03 -9.32e-04 -4.93e-04 -1.22e-04 3.02e-02 3.58e-02 -5.30e-04 -6.75e-05 ]
G [ -8.40e-04 -6.75e-05 3.78e-02 3.14e-02 -1.53e-04 -4.88e-04 -8.70e-04 -1.18e-03 -8.92e-05 -1.16e-04 1.84e-02 0.00e+00 0.00e+00 -2.09e-05 8.79e-04 ]
T [ 6.05e-03 2.63e-02 0.00e+00 -7.97e-06 -4.76e-06 5.77e-04 1.57e-04 9.92e-04 4.87e-04 2.73e-03 1.74e-03 6.73e-05 1.93e-05 -1.93e-04 -1.83e-04 ]

Frequency matrix

A [ 253 122 4 56 991 1653 710 931 890 1159 30 18 0 3262 2375 ]
C [ 1805 17 0 3 2811 838 1250 1065 1075 299 84 3867 3916 490 47 ]
G [ 212 304 3923 3852 94 307 1046 1014 1239 824 2896 0 2 29 1374 ]
T [ 1658 3485 1 17 32 1130 922 918 724 1647 918 43 10 147 132 ]

2 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000456.1 NFIC ENCSR796ITY K562 Homo sapiens
BP000795.1 NFIC ENCSR000BUT Ishikawa Homo sapiens
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