Detailed information of deep learning profile BP000269.1

This page shows detailed deep learning-derived predictions and motifs for RFX5 in SK-N-SH using a single trained BPNet model.

Model details

Name: RFX5
Model ID: BP000269.1
Cell line/tissue: SK-N-SH
Class: Fork head/winged helix factors
Family: RFX-related factors
Best Match(es): MA0510.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P48382  
Source: ENCSR000EHY
Model: BPNet

Contribution weight matrix (CWM)

A [ -7.20e-04 -5.62e-04 -1.37e-03 -1.25e-04 -5.43e-05 2.50e-03 -3.17e-04 1.88e-02 -1.14e-04 -4.17e-04 3.96e-02 6.21e-02 -3.78e-06 5.73e-03 1.66e-03 ]
C [ 1.05e-03 1.28e-02 1.82e-03 5.90e-03 4.72e-02 1.60e-02 3.52e-03 7.23e-06 5.25e-05 3.14e-02 -2.18e-05 -1.95e-06 6.13e-02 7.19e-04 -4.93e-04 ]
G [ 4.09e-04 2.91e-05 4.26e-03 1.07e-02 8.88e-05 9.14e-06 -7.74e-07 1.79e-02 5.20e-02 -1.23e-04 7.82e-04 6.94e-05 -7.12e-06 1.95e-05 1.59e-02 ]
T [ 1.34e-02 6.13e-03 5.57e-03 -1.49e-03 1.13e-06 -1.90e-05 2.59e-02 -1.81e-05 -4.23e-05 6.77e-04 -1.79e-04 -1.35e-05 1.01e-05 -6.91e-04 -1.06e-03 ]

Frequency matrix

A [ 580 408 589 613 62 1317 148 2287 204 726 3986 4513 13 2194 1093 ]
C [ 999 1791 984 1796 4102 2170 1042 51 25 3077 18 4 4507 997 712 ]
G [ 789 636 1120 1482 214 193 116 2195 4309 93 324 43 7 463 2357 ]
T [ 2200 1733 1875 677 190 888 3262 35 30 672 240 8 41 914 406 ]