Detailed information of deep learning profile BP000287.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000287.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BMO
Model: BPNet

Contribution weight matrix (CWM)

A [ -3.69e-04 1.40e-02 -9.40e-06 -6.73e-05 -1.50e-05 9.39e-02 4.25e-05 1.48e-02 -1.25e-03 1.75e-02 ]
C [ -4.28e-05 -4.87e-05 -1.52e-05 -4.55e-06 7.41e-07 2.40e-06 6.45e-02 -7.65e-04 7.36e-03 -8.66e-04 ]
G [ -9.22e-05 6.64e-02 5.37e-06 1.98e-03 9.23e-03 1.60e-05 -4.14e-05 -2.18e-04 -1.31e-03 -6.20e-04 ]
T [ 7.25e-02 4.01e-06 9.98e-02 6.97e-02 5.99e-02 -1.45e-05 1.52e-03 5.41e-03 1.32e-02 5.46e-03 ]

Frequency matrix

A [ 5269 22620 490 1525 1850 86508 5123 35694 13039 36563 ]
C [ 2111 1044 649 1268 1621 256 67908 17081 23748 7933 ]
G [ 2007 64087 285 11293 22393 908 1630 2695 14171 10796 ]
T [ 78950 587 86914 74252 62475 667 13677 32868 37380 33047 ]

Alternative motif patterns (AMPs)

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages