Detailed information of deep learning profile BP000298.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP000298.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0047.3 MA0032.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR066EBK
Model: BPNet

Contribution weight matrix (CWM)

A [ 3.82e-03 2.59e-02 4.05e-03 1.79e-03 -1.96e-05 5.22e-02 6.91e-02 9.18e-02 -2.32e-06 6.91e-02 ]
C [ -2.74e-04 -6.28e-04 -1.80e-04 -1.34e-05 2.54e-05 1.28e-02 8.82e-04 5.23e-06 5.59e-02 -3.92e-05 ]
G [ -3.82e-04 5.32e-03 -1.67e-03 6.69e-02 1.04e-07 7.98e-06 -7.47e-06 -1.14e-05 -1.82e-05 -3.81e-05 ]
T [ 3.04e-02 -7.59e-04 1.76e-02 4.40e-05 9.22e-02 -1.86e-05 -3.50e-05 -3.00e-06 1.95e-02 -1.27e-04 ]

Frequency matrix

A [ 34647 52617 37314 10795 138 69530 87226 100148 92 93171 ]
C [ 10128 12430 2366 531 181 29792 11937 357 68664 1677 ]
G [ 6775 23722 16702 88042 22 905 761 488 803 2183 ]
T [ 49817 12597 44984 1998 101025 1140 1443 373 31807 4335 ]

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000704.1 FOXA2 ENCSR310NYI liver Homo sapiens
BP000787.1 FOXA2 ENCSR080XEY liver Homo sapiens
BP000906.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens
BP001055.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens
BP001115.1 FOXA2 ENCSR000BRE A549 Homo sapiens
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