Detailed information of deep learning profile BP000323.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000323.1
Cell line/tissue: HepG2
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR269TNX
Model: BPNet

Contribution weight matrix (CWM)

A [ 7.54e-03 -1.61e-04 1.92e-03 -1.60e-06 3.21e-06 7.07e-02 4.77e-02 2.26e-03 -1.02e-03 ]
C [ -3.40e-04 2.72e-02 4.12e-02 2.77e-05 2.87e-05 3.53e-05 3.13e-05 -4.70e-05 2.00e-03 ]
G [ 3.78e-03 5.68e-04 -5.89e-06 8.72e-02 7.69e-02 5.12e-06 -3.28e-05 2.48e-02 -6.44e-04 ]
T [ -4.61e-04 -2.71e-04 -9.89e-05 1.45e-05 1.36e-05 -3.38e-06 1.62e-04 -1.05e-04 2.03e-02 ]

Frequency matrix

A [ 20674 6355 24476 75 246 56185 50522 13692 7899 ]
C [ 12299 36582 28442 33 129 411 1474 6719 16771 ]
G [ 18938 12497 3520 57666 57235 877 1588 35656 9197 ]
T [ 5899 2376 1372 36 200 337 4227 1743 23943 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000204.1 GABPA ENCSR350ORK liver Homo sapiens
BP000347.1 GABPA ENCSR331HPA GM12878 Homo sapiens
BP000391.1 GABPA ENCSR038RXU MCF-7 Homo sapiens
BP000406.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
BP000840.1 GABPA ENCSR038GMB liver Homo sapiens
Showing 10 profiles of page 1 from 2 pages