This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000335.1 |
| Cell line/tissue: | SK-N-SH |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000DXQ |
| Model: | BPNet |
| A [ | -2.65e-03 | -1.76e-03 | 2.99e-02 | -1.86e-03 | -6.37e-03 | 9.37e-02 | -4.76e-04 | 1.49e-02 | -6.73e-03 | -1.39e-03 | -2.61e-03 | -4.10e-03 | 6.87e-03 | -3.98e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.18e-01 | 2.16e-01 | 8.71e-04 | 7.17e-02 | 2.14e-02 | -3.90e-04 | -1.47e-04 | -3.19e-04 | -1.97e-04 | -1.49e-04 | 1.67e-03 | 1.05e-01 | 1.07e-03 | 3.86e-02 | ] |
| G [ | -2.45e-03 | -8.09e-04 | 8.32e-03 | 1.52e-02 | -2.57e-03 | 1.57e-03 | 2.34e-01 | 1.03e-01 | 7.49e-02 | 2.12e-01 | 1.37e-01 | 3.44e-04 | 6.54e-02 | 1.25e-02 | ] |
| T [ | -3.60e-03 | -1.10e-03 | -7.53e-03 | -2.79e-03 | 2.27e-02 | -2.85e-03 | -3.95e-04 | -8.57e-04 | 4.53e-03 | -9.58e-04 | -1.22e-03 | -4.42e-03 | -4.31e-03 | -7.82e-04 | ] |
| A [ | 5315 | 283 | 36782 | 3747 | 8816 | 46464 | 455 | 19394 | 4636 | 1180 | 2474 | 9587 | 20803 | 6478 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 45406 | 58178 | 3504 | 31579 | 23610 | 2209 | 105 | 727 | 2852 | 732 | 4379 | 40319 | 5401 | 27784 | ] |
| G [ | 4228 | 47 | 8645 | 21224 | 5781 | 5833 | 57757 | 37587 | 33940 | 55697 | 46876 | 3399 | 28252 | 17259 | ] |
| T [ | 3621 | 62 | 9639 | 2020 | 20363 | 4064 | 253 | 862 | 17142 | 961 | 4841 | 5265 | 4114 | 7050 | ] |
