This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000337.1 |
| Cell line/tissue: | GM12878 |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000AKB |
| Model: | BPNet |
| A [ | -2.07e-03 | -1.21e-03 | 2.26e-02 | -1.58e-03 | -5.75e-03 | 7.65e-02 | -3.71e-04 | 1.47e-02 | -5.24e-03 | -9.75e-04 | -2.28e-03 | -3.55e-03 | 7.09e-03 | -2.83e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 9.33e-02 | 1.76e-01 | 4.05e-04 | 5.99e-02 | 1.47e-02 | -2.15e-04 | -8.62e-05 | -1.65e-04 | -2.04e-04 | -2.38e-05 | 2.08e-03 | 9.01e-02 | 8.14e-04 | 3.28e-02 | ] |
| G [ | -1.68e-03 | -4.09e-04 | 6.15e-03 | 1.18e-02 | -1.96e-03 | 1.25e-03 | 1.85e-01 | 7.76e-02 | 5.98e-02 | 1.69e-01 | 1.05e-01 | 6.42e-04 | 5.54e-02 | 1.09e-02 | ] |
| T [ | -2.78e-03 | -8.17e-04 | -5.41e-03 | -2.21e-03 | 2.22e-02 | -2.68e-03 | -4.03e-04 | -5.69e-04 | 4.61e-03 | -8.86e-04 | -7.03e-04 | -3.75e-03 | -3.67e-03 | -9.27e-04 | ] |
| A [ | 4721 | 1184 | 32407 | 3301 | 7675 | 40826 | 426 | 17658 | 3322 | 824 | 2041 | 7759 | 19177 | 5342 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 39020 | 48169 | 2876 | 28123 | 19353 | 1445 | 89 | 513 | 1872 | 403 | 3359 | 34902 | 3776 | 24454 | ] |
| G [ | 3204 | 383 | 7055 | 16974 | 4168 | 4458 | 49386 | 31179 | 28484 | 48148 | 40310 | 2663 | 24024 | 14564 | ] |
| T [ | 3188 | 398 | 7796 | 1736 | 18937 | 3405 | 233 | 784 | 16456 | 759 | 4424 | 4809 | 3157 | 5774 | ] |
