Detailed information of deep learning profile BP000343.1

This page shows detailed deep learning-derived predictions and motifs for REST in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000343.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR892DRK
Model: BPNet

Contribution weight matrix (CWM)

A [ 7.36e-03 7.92e-04 1.68e-06 -1.72e-04 -6.72e-04 -1.78e-05 -1.37e-06 7.34e-02 -5.15e-05 7.84e-02 1.32e-05 -6.00e-04 5.18e-04 4.57e-05 -2.86e-04 ]
C [ 4.54e-03 1.08e-02 4.73e-03 1.12e-02 9.30e-04 1.71e-05 0.00e+00 9.23e-05 5.69e-02 1.14e-04 0.00e+00 4.67e-02 -1.72e-04 3.05e-02 3.40e-02 ]
G [ 3.66e-03 -4.40e-04 1.19e-02 -1.56e-04 -4.88e-04 8.85e-02 9.91e-02 -5.67e-05 -7.81e-05 1.88e-06 9.63e-02 -3.09e-04 1.23e-02 5.89e-04 -6.18e-05 ]
T [ -1.50e-03 3.88e-04 -5.87e-04 2.11e-03 3.08e-02 0.00e+00 1.96e-05 6.96e-05 -1.14e-05 6.51e-06 2.32e-06 7.36e-04 8.55e-03 -5.46e-04 3.51e-05 ]

Frequency matrix

A [ 2376 663 715 1300 544 72 92 4122 168 4353 67 388 1126 641 484 ]
C [ 737 2492 2194 1202 612 17 3 159 3591 15 3 3149 89 2666 3042 ]
G [ 853 578 935 742 411 4309 4288 23 497 7 4326 264 1489 810 135 ]
T [ 438 671 560 1160 2837 6 21 100 148 29 8 603 1700 287 743 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000032.1 REST ENCSR000BSP MCF-7 Homo sapiens
BP000035.1 REST ENCSR000BTV neural cell Homo sapiens
BP000036.1 REST ENCSR000BUP Panc1 Homo sapiens
BP000037.1 REST ENCSR000BUU Ishikawa Homo sapiens
BP000038.1 REST ENCSR000BVI HCT116 Homo sapiens
BP000063.1 REST ENCSR054JMQ K562 Homo sapiens
BP000075.1 REST ENCSR137ZMQ K562 Homo sapiens
BP000179.1 REST ENCSR893QWP liver Homo sapiens
BP000180.1 REST ENCSR896UBV HEK293 Homo sapiens
BP000383.1 REST ENCSR867WPH liver Homo sapiens
Showing 10 profiles of page 2 from 3 pages