Detailed information of deep learning profile BP000347.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000347.1
Cell line/tissue: GM12878
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR331HPA
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.32e-04 1.63e-03 -4.57e-06 3.15e-06 5.83e-02 4.21e-02 1.18e-03 -6.31e-04 ]
C [ 1.92e-02 4.11e-02 2.53e-05 1.86e-05 7.59e-05 8.45e-05 5.27e-04 1.79e-03 ]
G [ 1.29e-04 -5.90e-05 7.14e-02 6.21e-02 -5.20e-07 3.20e-06 1.77e-02 -4.31e-04 ]
T [ -3.21e-04 -5.12e-05 1.94e-05 3.83e-05 2.16e-07 9.60e-05 -8.59e-05 1.70e-02 ]

Frequency matrix

A [ 5998 14128 190 1163 38295 34040 9440 4755 ]
C [ 20661 23045 97 316 329 1771 6803 11416 ]
G [ 10919 2474 39616 38212 997 1198 22016 5713 ]
T [ 2561 492 236 448 518 3131 1881 18255 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000852.1 GABPA ENCSR290MUH K562 Homo sapiens
BP001058.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens
BP001108.1 GABPA ENCSR000BPY A549 Homo sapiens
Showing 3 profiles of page 2 from 2 pages