Detailed information of deep learning profile BP000347.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000347.1
Cell line/tissue: GM12878
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR331HPA
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.70e-02 -8.59e-05 9.60e-05 2.16e-07 3.83e-05 1.94e-05 -5.12e-05 -3.21e-04 ]
C [ -4.31e-04 1.77e-02 3.20e-06 -5.20e-07 6.21e-02 7.14e-02 -5.90e-05 1.29e-04 ]
G [ 1.79e-03 5.27e-04 8.45e-05 7.59e-05 1.86e-05 2.53e-05 4.11e-02 1.92e-02 ]
T [ -6.31e-04 1.18e-03 4.21e-02 5.83e-02 3.15e-06 -4.57e-06 1.63e-03 1.32e-04 ]

Frequency matrix

A [ 18255 1881 3131 518 448 236 492 2561 ]
C [ 5713 22016 1198 997 38212 39616 2474 10919 ]
G [ 11416 6803 1771 329 316 97 23045 20661 ]
T [ 4755 9440 34040 38295 1163 190 14128 5998 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000204.1 GABPA ENCSR350ORK liver Homo sapiens
BP000323.1 GABPA ENCSR269TNX HepG2 Homo sapiens
BP000391.1 GABPA ENCSR038RXU MCF-7 Homo sapiens
BP000406.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
BP000840.1 GABPA ENCSR038GMB liver Homo sapiens
Showing 10 profiles of page 1 from 2 pages