Detailed information of deep learning profile BP000348.1

This page shows detailed deep learning-derived predictions and motifs for EGR1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000348.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
Best Match(es): MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BMQ
Model: BPNet

Contribution weight matrix (CWM)

A [ 5.89e-04 -2.21e-04 7.91e-04 -2.02e-07 -1.66e-06 -1.52e-05 8.93e-03 -2.35e-06 -4.35e-04 -2.11e-04 ]
C [ 1.23e-02 3.58e-02 2.70e-05 5.57e-02 4.34e-02 3.68e-02 9.79e-03 5.13e-02 3.58e-05 2.05e-02 ]
G [ -2.64e-04 -9.38e-05 1.70e-02 1.90e-06 1.00e-06 8.20e-07 -3.72e-05 2.27e-08 1.87e-02 -2.42e-04 ]
T [ -5.76e-04 -2.41e-04 -1.01e-03 2.72e-06 1.93e-05 2.75e-05 -7.47e-05 -3.43e-06 -1.20e-03 -2.36e-04 ]

Frequency matrix

A [ 12130 3025 17170 102 1461 1300 26267 212 17005 6333 ]
C [ 57920 79313 8835 88486 84291 76465 48834 88129 16744 57890 ]
G [ 11749 2772 48050 397 2349 3751 10408 373 39428 15180 ]
T [ 7338 4027 15081 152 1037 7621 3629 423 15960 9734 ]

10 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000330.1 EGR1 ENCSR024CNP K562 Homo sapiens
BP000440.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens
BP000470.1 EGR1 ENCSR026GSW HepG2 Homo sapiens
BP000507.1 EGR1 ENCSR211LTF K562 Homo sapiens
BP000628.1 EGR1 ENCSR736BUG liver Homo sapiens
BP000635.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens
BP000770.1 EGR1 ENCSR000BNE K562 Homo sapiens
BP000794.1 EGR1 ENCSR000BJA H1 Homo sapiens
BP001030.1 EGR1 ENCSR290ZOS liver Homo sapiens
BP001164.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens
Showing 10 profiles of page 1 from 1 pages
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