Detailed information of deep learning profile BP000348.1

This page shows detailed deep learning-derived predictions and motifs for EGR1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: EGR1
Model ID: BP000348.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
Best Match(es): MA0162.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCSR000BMQ
Model: BPNet

Contribution weight matrix (CWM)

A [ -2.36e-04 -1.20e-03 -3.43e-06 -7.47e-05 2.75e-05 1.93e-05 2.72e-06 -1.01e-03 -2.41e-04 -5.76e-04 ]
C [ -2.42e-04 1.87e-02 2.27e-08 -3.72e-05 8.20e-07 1.00e-06 1.90e-06 1.70e-02 -9.38e-05 -2.64e-04 ]
G [ 2.05e-02 3.58e-05 5.13e-02 9.79e-03 3.68e-02 4.34e-02 5.57e-02 2.70e-05 3.58e-02 1.23e-02 ]
T [ -2.11e-04 -4.35e-04 -2.35e-06 8.93e-03 -1.52e-05 -1.66e-06 -2.02e-07 7.91e-04 -2.21e-04 5.89e-04 ]

Frequency matrix

A [ 9734 15960 423 3629 7621 1037 152 15081 4027 7338 ]
C [ 15180 39428 373 10408 3751 2349 397 48050 2772 11749 ]
G [ 57890 16744 88129 48834 76465 84291 88486 8835 79313 57920 ]
T [ 6333 17005 212 26267 1300 1461 102 17170 3025 12130 ]

10 profiles found for the same TF (EGR1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000330.1 EGR1 ENCSR024CNP K562 Homo sapiens
BP000440.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens
BP000470.1 EGR1 ENCSR026GSW HepG2 Homo sapiens
BP000507.1 EGR1 ENCSR211LTF K562 Homo sapiens
BP000628.1 EGR1 ENCSR736BUG liver Homo sapiens
BP000635.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens
BP000770.1 EGR1 ENCSR000BNE K562 Homo sapiens
BP000794.1 EGR1 ENCSR000BJA H1 Homo sapiens
BP001030.1 EGR1 ENCSR290ZOS liver Homo sapiens
BP001164.1 EGR1 ENCSR000BSQ Ishikawa Homo sapiens
Showing 10 profiles of page 1 from 1 pages
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