Detailed information of deep learning profile BP000357.1

This page shows detailed deep learning-derived predictions and motifs for RELA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000357.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
Best Match(es): MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAG
Model: BPNet

Contribution weight matrix (CWM)

A [ -3.59e-03 -5.06e-04 -4.19e-06 3.70e-02 6.73e-02 5.09e-02 -9.52e-05 -7.31e-04 2.82e-03 -1.84e-06 -2.08e-04 ]
C [ 7.71e-04 -6.04e-07 -2.65e-06 -6.96e-04 -5.85e-05 -1.69e-04 6.02e-04 1.96e-02 6.13e-02 9.33e-02 6.42e-02 ]
G [ 9.86e-03 5.79e-02 6.94e-02 3.53e-03 -1.45e-04 -1.99e-04 -7.06e-04 -4.80e-04 -4.68e-06 7.17e-06 -8.95e-06 ]
T [ -1.81e-03 -4.24e-04 -7.11e-05 -1.76e-04 -3.53e-05 2.14e-04 8.22e-03 1.27e-02 -2.84e-06 5.50e-07 -1.09e-04 ]

Frequency matrix

A [ 2853 1441 450 10793 14036 13302 3026 1680 2836 163 964 ]
C [ 2092 266 21 494 226 330 2661 7124 11546 14541 13105 ]
G [ 4917 12180 13899 2864 397 544 4901 635 86 25 296 ]
T [ 4874 849 366 585 77 560 4149 5296 268 7 371 ]

Alternative motif patterns (AMPs)

7 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000234.1 RELA ENCSR000EBD GM18951 Homo sapiens
BP000324.1 RELA ENCSR000EAI GM12891 Homo sapiens
BP000338.1 RELA ENCSR000EBM GM19193 Homo sapiens
BP000485.1 RELA ENCSR580HOI HepG2 Homo sapiens
BP000574.1 RELA ENCSR000EAQ GM15510 Homo sapiens
BP000725.1 RELA ENCSR000EAN GM12892 Homo sapiens
BP000749.1 RELA ENCSR664POU GM12878 Homo sapiens
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