Detailed information of deep learning profile BP000357.1

This page shows detailed deep learning-derived predictions and motifs for RELA in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: RELA
Model ID: BP000357.1
Cell line/tissue: GM12878
Class: Rel homology region (RHR) factors
Family: NF-kappaB-related factors
Best Match(es): MA0107.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q04206  
Source: ENCSR000EAG
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.09e-04 5.50e-07 -2.84e-06 1.27e-02 8.22e-03 2.14e-04 -3.53e-05 -1.76e-04 -7.11e-05 -4.24e-04 -1.81e-03 ]
C [ -8.95e-06 7.17e-06 -4.68e-06 -4.80e-04 -7.06e-04 -1.99e-04 -1.45e-04 3.53e-03 6.94e-02 5.79e-02 9.86e-03 ]
G [ 6.42e-02 9.33e-02 6.13e-02 1.96e-02 6.02e-04 -1.69e-04 -5.85e-05 -6.96e-04 -2.65e-06 -6.04e-07 7.71e-04 ]
T [ -2.08e-04 -1.84e-06 2.82e-03 -7.31e-04 -9.52e-05 5.09e-02 6.73e-02 3.70e-02 -4.19e-06 -5.06e-04 -3.59e-03 ]

Frequency matrix

A [ 371 7 268 5296 4149 560 77 585 366 849 4874 ]
C [ 296 25 86 635 4901 544 397 2864 13899 12180 4917 ]
G [ 13105 14541 11546 7124 2661 330 226 494 21 266 2092 ]
T [ 964 163 2836 1680 3026 13302 14036 10793 450 1441 2853 ]

Alternative motif patterns (AMPs)

7 profiles found for the same TF (RELA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000234.1 RELA ENCSR000EBD GM18951 Homo sapiens
BP000324.1 RELA ENCSR000EAI GM12891 Homo sapiens
BP000338.1 RELA ENCSR000EBM GM19193 Homo sapiens
BP000485.1 RELA ENCSR580HOI HepG2 Homo sapiens
BP000574.1 RELA ENCSR000EAQ GM15510 Homo sapiens
BP000725.1 RELA ENCSR000EAN GM12892 Homo sapiens
BP000749.1 RELA ENCSR664POU GM12878 Homo sapiens
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