Detailed information of deep learning profile BP000381.1

This page shows detailed deep learning-derived predictions and motifs for USF1 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000381.1
Cell line/tissue: SK-N-SH
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
Best Match(es): MA0093.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BTZ
Model: BPNet

Contribution weight matrix (CWM)

A [ 2.46e-03 -6.48e-04 -4.57e-06 9.35e-02 -5.59e-06 5.85e-03 -2.78e-04 -4.77e-06 1.08e-02 -2.01e-03 ]
C [ -3.46e-04 4.61e-04 1.25e-01 -6.49e-06 7.88e-02 6.82e-04 1.57e-04 6.21e-06 -1.56e-03 1.31e-02 ]
G [ 3.87e-02 -6.04e-04 3.47e-05 1.27e-05 6.91e-04 6.26e-02 -2.01e-04 1.19e-01 4.91e-03 -4.85e-04 ]
T [ -2.53e-04 4.37e-02 -3.21e-07 -1.91e-05 1.94e-03 -1.19e-05 7.56e-02 -1.49e-05 -1.69e-03 3.56e-03 ]

Frequency matrix

A [ 5417 1513 38 22802 57 5768 641 11 9931 1862 ]
C [ 2997 5594 23238 135 17768 1566 659 35 3558 11208 ]
G [ 13854 2665 23 227 1504 15859 498 23150 7610 4022 ]
T [ 1031 13527 0 135 3970 107 21501 103 2200 6207 ]

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000253.1 USF1 ENCSR000BGI GM12878 Homo sapiens
BP000422.1 USF1 ENCSR099FCQ HepG2 Homo sapiens
BP000512.1 USF1 ENCSR000BPV A549 Homo sapiens
BP000514.1 USF1 ENCSR000BSX Ishikawa Homo sapiens
BP000844.1 USF1 ENCSR000BIU H1 Homo sapiens
BP000934.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens
BP000968.1 USF1 ENCSR000BJB A549 Homo sapiens
BP000990.1 USF1 ENCSR000BVK HCT116 Homo sapiens
BP001010.1 USF1 ENCSR000BHX A549 Homo sapiens
BP001029.1 USF1 ENCSR000BGM HepG2 Homo sapiens
Showing 10 profiles of page 1 from 2 pages