Detailed information of deep learning profile BP000391.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000391.1
Cell line/tissue: MCF-7
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR038RXU
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.16e-02 -1.30e-04 -2.19e-04 -2.07e-06 -1.04e-05 -1.16e-05 -1.71e-05 -2.48e-04 -1.72e-04 -3.98e-04 -1.19e-03 ]
C [ -1.27e-04 1.50e-02 -7.84e-05 -1.40e-05 5.01e-02 6.75e-02 1.36e-07 -8.24e-05 3.15e-03 2.10e-03 4.90e-03 ]
G [ 3.32e-03 6.22e-04 4.40e-05 -2.39e-05 -3.84e-05 1.64e-06 5.62e-02 2.38e-02 -1.02e-03 2.43e-03 3.68e-03 ]
T [ -1.21e-03 1.72e-04 4.14e-02 4.88e-02 -8.35e-06 -5.42e-06 -4.95e-04 -2.53e-04 5.00e-03 2.21e-04 -1.23e-03 ]

Frequency matrix

A [ 6838 1606 1264 965 534 33 62 1241 2897 3099 2544 ]
C [ 4120 9670 1777 1903 18161 19967 621 4879 7662 6125 7413 ]
G [ 6804 4722 1824 1093 560 132 17437 11829 4347 6365 6371 ]
T [ 2374 4137 15271 16175 881 4 2016 2187 5229 4547 3807 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000852.1 GABPA ENCSR290MUH K562 Homo sapiens
BP001058.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens
BP001108.1 GABPA ENCSR000BPY A549 Homo sapiens
Showing 3 profiles of page 2 from 2 pages