Detailed information of deep learning profile BP000391.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000391.1
Cell line/tissue: MCF-7
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR038RXU
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.23e-03 2.21e-04 5.00e-03 -2.53e-04 -4.95e-04 -5.42e-06 -8.35e-06 4.88e-02 4.14e-02 1.72e-04 -1.21e-03 ]
C [ 3.68e-03 2.43e-03 -1.02e-03 2.38e-02 5.62e-02 1.64e-06 -3.84e-05 -2.39e-05 4.40e-05 6.22e-04 3.32e-03 ]
G [ 4.90e-03 2.10e-03 3.15e-03 -8.24e-05 1.36e-07 6.75e-02 5.01e-02 -1.40e-05 -7.84e-05 1.50e-02 -1.27e-04 ]
T [ -1.19e-03 -3.98e-04 -1.72e-04 -2.48e-04 -1.71e-05 -1.16e-05 -1.04e-05 -2.07e-06 -2.19e-04 -1.30e-04 1.16e-02 ]

Frequency matrix

A [ 3807 4547 5229 2187 2016 4 881 16175 15271 4137 2374 ]
C [ 6371 6365 4347 11829 17437 132 560 1093 1824 4722 6804 ]
G [ 7413 6125 7662 4879 621 19967 18161 1903 1777 9670 4120 ]
T [ 2544 3099 2897 1241 62 33 534 965 1264 1606 6838 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000204.1 GABPA ENCSR350ORK liver Homo sapiens
BP000323.1 GABPA ENCSR269TNX HepG2 Homo sapiens
BP000347.1 GABPA ENCSR331HPA GM12878 Homo sapiens
BP000406.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
BP000840.1 GABPA ENCSR038GMB liver Homo sapiens
Showing 10 profiles of page 1 from 2 pages