Detailed information of deep learning profile BP000391.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000391.1
Cell line/tissue: MCF-7
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR038RXU
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.16e-02 -1.30e-04 -2.19e-04 -2.07e-06 -1.04e-05 -1.16e-05 -1.71e-05 -2.48e-04 -1.72e-04 -3.98e-04 -1.19e-03 ]
C [ -1.27e-04 1.50e-02 -7.84e-05 -1.40e-05 5.01e-02 6.75e-02 1.36e-07 -8.24e-05 3.15e-03 2.10e-03 4.90e-03 ]
G [ 3.32e-03 6.22e-04 4.40e-05 -2.39e-05 -3.84e-05 1.64e-06 5.62e-02 2.38e-02 -1.02e-03 2.43e-03 3.68e-03 ]
T [ -1.21e-03 1.72e-04 4.14e-02 4.88e-02 -8.35e-06 -5.42e-06 -4.95e-04 -2.53e-04 5.00e-03 2.21e-04 -1.23e-03 ]

Frequency matrix

A [ 6838 1606 1264 965 534 33 62 1241 2897 3099 2544 ]
C [ 4120 9670 1777 1903 18161 19967 621 4879 7662 6125 7413 ]
G [ 6804 4722 1824 1093 560 132 17437 11829 4347 6365 6371 ]
T [ 2374 4137 15271 16175 881 4 2016 2187 5229 4547 3807 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000204.1 GABPA ENCSR350ORK liver Homo sapiens
BP000323.1 GABPA ENCSR269TNX HepG2 Homo sapiens
BP000347.1 GABPA ENCSR331HPA GM12878 Homo sapiens
BP000406.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
BP000840.1 GABPA ENCSR038GMB liver Homo sapiens
Showing 10 profiles of page 1 from 2 pages