This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000402.1 |
| Cell line/tissue: | HCT116 |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR446FOM |
| Model: | BPNet |
| A [ | -1.50e-03 | -1.10e-03 | 3.02e-02 | -1.39e-03 | -3.83e-03 | 8.17e-02 | -4.11e-04 | 9.34e-03 | -5.15e-03 | -1.09e-03 | -2.06e-03 | -1.48e-03 | 7.21e-03 | -2.17e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.04e-01 | 1.77e-01 | -1.06e-04 | 6.05e-02 | 1.58e-02 | -2.96e-04 | -1.68e-05 | -1.61e-04 | -2.22e-04 | -1.88e-04 | 2.57e-03 | 6.73e-02 | 1.40e-03 | 2.42e-02 | ] |
| G [ | -1.81e-03 | -4.73e-04 | 4.91e-03 | 1.31e-02 | -2.19e-03 | 1.54e-03 | 1.81e-01 | 8.64e-02 | 5.71e-02 | 1.51e-01 | 8.99e-02 | 6.97e-04 | 4.12e-02 | 6.69e-03 | ] |
| T [ | -2.42e-03 | -8.28e-04 | -6.15e-03 | -2.00e-03 | 2.45e-02 | -1.99e-03 | -3.13e-04 | -5.98e-04 | 3.01e-03 | -7.37e-04 | -8.31e-04 | -3.00e-03 | -3.19e-03 | -3.64e-04 | ] |
| A [ | 4840 | 1457 | 34429 | 3618 | 7972 | 43780 | 322 | 17616 | 3746 | 341 | 2123 | 8877 | 19677 | 6364 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 41537 | 50116 | 2831 | 29918 | 20649 | 1198 | 65 | 330 | 1612 | 126 | 3386 | 35507 | 4667 | 24497 | ] |
| G [ | 2933 | 374 | 6657 | 17273 | 3823 | 4293 | 51788 | 33724 | 30222 | 51589 | 42583 | 2903 | 24279 | 15099 | ] |
| T [ | 3068 | 431 | 8460 | 1568 | 19933 | 3107 | 203 | 708 | 16798 | 322 | 4287 | 5091 | 3756 | 6418 | ] |
