Detailed information of deep learning profile BP000406.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000406.1
Cell line/tissue: SK-N-SH
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BTG
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.90e-02 -4.86e-05 2.74e-04 -2.29e-05 2.03e-05 0.00e+00 -1.39e-04 -2.90e-04 ]
C [ -7.52e-04 2.16e-02 -3.76e-05 3.85e-05 8.22e-02 9.93e-02 -7.11e-05 3.69e-04 ]
G [ 2.20e-03 5.96e-05 4.31e-05 1.11e-04 1.01e-05 2.18e-05 5.41e-02 2.60e-02 ]
T [ -9.45e-04 1.78e-03 5.22e-02 7.60e-02 -9.85e-06 6.65e-06 4.00e-04 -9.65e-07 ]

Frequency matrix

A [ 18240 3304 4206 852 540 13 996 3304 ]
C [ 8792 25814 2531 2386 47326 48751 3598 12883 ]
G [ 14842 7955 2580 1316 372 44 30190 25957 ]
T [ 6956 11757 39514 44277 592 22 14046 6686 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000204.1 GABPA ENCSR350ORK liver Homo sapiens
BP000323.1 GABPA ENCSR269TNX HepG2 Homo sapiens
BP000347.1 GABPA ENCSR331HPA GM12878 Homo sapiens
BP000391.1 GABPA ENCSR038RXU MCF-7 Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
BP000840.1 GABPA ENCSR038GMB liver Homo sapiens
Showing 10 profiles of page 1 from 2 pages