Detailed information of deep learning profile BP000406.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP000406.1
Cell line/tissue: SK-N-SH
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BTG
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.90e-02 -4.86e-05 2.74e-04 -2.29e-05 2.03e-05 0.00e+00 -1.39e-04 -2.90e-04 ]
C [ -7.52e-04 2.16e-02 -3.76e-05 3.85e-05 8.22e-02 9.93e-02 -7.11e-05 3.69e-04 ]
G [ 2.20e-03 5.96e-05 4.31e-05 1.11e-04 1.01e-05 2.18e-05 5.41e-02 2.60e-02 ]
T [ -9.45e-04 1.78e-03 5.22e-02 7.60e-02 -9.85e-06 6.65e-06 4.00e-04 -9.65e-07 ]

Frequency matrix

A [ 18240 3304 4206 852 540 13 996 3304 ]
C [ 8792 25814 2531 2386 47326 48751 3598 12883 ]
G [ 14842 7955 2580 1316 372 44 30190 25957 ]
T [ 6956 11757 39514 44277 592 22 14046 6686 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000852.1 GABPA ENCSR290MUH K562 Homo sapiens
BP001058.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens
BP001108.1 GABPA ENCSR000BPY A549 Homo sapiens
Showing 3 profiles of page 2 from 2 pages