Detailed information of deep learning profile BP000409.1

This page shows detailed deep learning-derived predictions and motifs for NFIB in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIB
Model ID: BP000409.1
Cell line/tissue: MCF-7
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
Best Match(es): MA1643.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O00712  
Source: ENCSR702BYX
Model: BPNet

Contribution weight matrix (CWM)

A [ -7.54e-04 -1.77e-04 -6.60e-07 -5.45e-06 6.03e-04 1.10e-02 -2.17e-03 -2.28e-03 -1.29e-05 -7.74e-04 -1.97e-04 -6.62e-05 -1.49e-06 7.30e-02 1.52e-02 ]
C [ 5.22e-03 -3.94e-05 -5.20e-07 2.33e-06 9.43e-02 -7.54e-04 7.25e-03 4.10e-03 2.66e-03 -1.48e-04 -4.61e-04 1.30e-01 1.44e-01 1.82e-04 -2.07e-03 ]
G [ -8.51e-04 -1.01e-04 1.46e-01 1.35e-01 -1.50e-04 -2.67e-05 2.54e-03 3.87e-03 7.69e-03 -7.47e-04 8.03e-02 1.12e-05 2.07e-06 -3.96e-05 1.96e-02 ]
T [ 4.68e-02 7.97e-02 -1.57e-07 -5.05e-06 -8.09e-05 -5.00e-04 -4.55e-04 -2.01e-03 -2.24e-03 1.16e-02 2.18e-03 4.09e-06 -3.26e-06 -7.16e-04 -2.02e-03 ]

Frequency matrix

A [ 1658 670 20 180 3697 15045 5718 8241 8088 9687 367 142 59 28578 14490 ]
C [ 13687 338 41 40 28895 6482 11437 8522 8173 2090 830 32896 33185 3233 1857 ]
G [ 1249 2944 33207 32985 493 1865 8134 8457 11328 6677 27398 61 52 475 14816 ]
T [ 16720 29362 46 109 229 9922 8024 8095 5725 14860 4718 215 18 1029 2151 ]

Alternative motif patterns (AMPs)

2 profiles found for the same TF (NFIB) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000219.1 NFIB ENCSR414WBQ HepG2 Homo sapiens
BP000888.1 NFIB ENCSR582ZOA MCF-7 Homo sapiens
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