Detailed information of deep learning profile BP000429.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000429.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR267DFA
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.94e-04 1.14e-02 -6.83e-06 -8.16e-06 -3.55e-06 5.48e-02 -2.99e-05 6.91e-03 -1.03e-03 1.20e-02 ]
C [ -1.63e-05 -2.13e-05 -1.86e-06 -1.98e-06 2.15e-06 0.00e+00 4.05e-02 -7.87e-04 3.24e-03 -4.49e-04 ]
G [ -3.45e-05 3.40e-02 -2.33e-06 9.96e-04 7.61e-03 2.01e-05 -1.51e-06 -7.83e-05 -8.54e-04 -5.32e-04 ]
T [ 4.62e-02 0.00e+00 6.11e-02 3.93e-02 2.98e-02 0.00e+00 8.32e-04 3.96e-03 9.57e-03 4.24e-03 ]

Frequency matrix

A [ 628 4407 67 306 373 15049 684 5932 1929 6686 ]
C [ 293 227 35 215 360 40 12085 2889 3902 1006 ]
G [ 213 10691 46 2451 4651 220 169 396 2265 1556 ]
T [ 14251 60 15237 12413 10001 76 2447 6168 7290 6137 ]

Alternative motif patterns (AMPs)

Other motif patterns

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages