Detailed information of deep learning profile BP000429.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000429.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4 MA0148.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR267DFA
Model: BPNet

Contribution weight matrix (CWM)

A [ 4.24e-03 9.57e-03 3.96e-03 8.32e-04 0.00e+00 2.98e-02 3.93e-02 6.11e-02 0.00e+00 4.62e-02 ]
C [ -5.32e-04 -8.54e-04 -7.83e-05 -1.51e-06 2.01e-05 7.61e-03 9.96e-04 -2.33e-06 3.40e-02 -3.45e-05 ]
G [ -4.49e-04 3.24e-03 -7.87e-04 4.05e-02 0.00e+00 2.15e-06 -1.98e-06 -1.86e-06 -2.13e-05 -1.63e-05 ]
T [ 1.20e-02 -1.03e-03 6.91e-03 -2.99e-05 5.48e-02 -3.55e-06 -8.16e-06 -6.83e-06 1.14e-02 -1.94e-04 ]

Frequency matrix

A [ 6137 7290 6168 2447 76 10001 12413 15237 60 14251 ]
C [ 1556 2265 396 169 220 4651 2451 46 10691 213 ]
G [ 1006 3902 2889 12085 40 360 215 35 227 293 ]
T [ 6686 1929 5932 684 15049 373 306 67 4407 628 ]

Alternative motif patterns (AMPs)

Other motif patterns

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000465.1 FOXA1 ENCSR324RCI liver Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages