This page shows detailed deep learning-derived predictions and motifs for CTCF in neural progenitor cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000438.1 |
| Cell line/tissue: | neural progenitor cell |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR125NBL |
| Model: | BPNet |
| A [ | -1.16e-03 | -1.15e-03 | 1.79e-02 | -1.09e-03 | -3.35e-03 | 5.73e-02 | -3.38e-04 | 8.60e-03 | -4.75e-03 | -1.09e-03 | -1.75e-03 | -2.41e-03 | 5.05e-03 | -2.18e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 7.48e-02 | 1.36e-01 | 5.22e-04 | 4.32e-02 | 1.19e-02 | -2.77e-04 | -2.60e-05 | -2.09e-04 | -2.24e-04 | -2.82e-05 | 2.90e-03 | 6.02e-02 | 1.51e-03 | 2.60e-02 | ] |
| G [ | -1.42e-03 | -4.67e-04 | 4.53e-03 | 1.04e-02 | -1.57e-03 | 1.62e-03 | 1.44e-01 | 7.24e-02 | 5.18e-02 | 1.27e-01 | 7.89e-02 | 7.73e-04 | 4.02e-02 | 7.16e-03 | ] |
| T [ | -2.28e-03 | -8.19e-04 | -4.54e-03 | -1.85e-03 | 1.67e-02 | -1.98e-03 | -3.41e-04 | -6.46e-04 | 2.54e-03 | -7.52e-04 | -7.24e-04 | -2.70e-03 | -2.77e-03 | -6.82e-04 | ] |
| A [ | 4969 | 4 | 35459 | 3124 | 8127 | 44601 | 7 | 19713 | 3465 | 306 | 1502 | 8241 | 20800 | 5840 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 40518 | 52133 | 2060 | 28287 | 20683 | 1035 | 1 | 269 | 1454 | 61 | 2404 | 37726 | 3491 | 24555 | ] |
| G [ | 3226 | 0 | 5619 | 19019 | 4223 | 3577 | 52122 | 31613 | 29985 | 51597 | 43559 | 1865 | 24301 | 15619 | ] |
| T [ | 3423 | 0 | 8998 | 1707 | 19105 | 2924 | 7 | 542 | 17233 | 173 | 4672 | 4305 | 3545 | 6123 | ] |
