This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000453.1 |
| Cell line/tissue: | SK-N-SH |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR541AMF |
| Model: | BPNet |
| A [ | -1.26e-03 | -3.71e-03 | -3.10e-03 | -2.28e-04 | -3.98e-04 | 4.25e-03 | -7.41e-04 | -3.81e-04 | -2.30e-03 | 1.74e-02 | -2.47e-03 | -6.23e-03 | -1.12e-03 | -2.85e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.13e-02 | 6.03e-02 | -1.21e-03 | 1.22e-01 | 1.77e-01 | 5.50e-02 | 8.38e-02 | 1.80e-01 | 7.06e-04 | -2.65e-03 | 1.32e-02 | 5.56e-03 | -6.45e-04 | -2.32e-03 | ] |
| G [ | 3.56e-02 | -1.01e-03 | 9.17e-02 | -6.86e-04 | -5.19e-05 | -4.71e-04 | -2.95e-04 | -9.44e-05 | -3.01e-04 | 1.76e-02 | 5.01e-02 | 8.45e-04 | 1.71e-01 | 8.64e-02 | ] |
| T [ | -2.92e-03 | 1.10e-02 | -3.13e-03 | -1.17e-03 | -6.54e-04 | -6.08e-03 | 1.55e-02 | -3.70e-04 | 7.43e-02 | -4.74e-03 | -2.12e-03 | 2.29e-02 | -1.45e-03 | -1.94e-03 | ] |
| A [ | 5300 | 2752 | 4110 | 3525 | 177 | 17763 | 444 | 245 | 3347 | 17510 | 1929 | 8247 | 237 | 3622 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 15869 | 23816 | 1494 | 45304 | 49967 | 27261 | 30658 | 49828 | 4177 | 4603 | 19088 | 6270 | 173 | 3714 | ] |
| G [ | 23964 | 2635 | 37467 | 950 | 68 | 1661 | 305 | 63 | 1349 | 20225 | 25812 | 2665 | 49415 | 37836 | ] |
| T [ | 5405 | 21335 | 7466 | 758 | 325 | 3852 | 19130 | 401 | 41663 | 8200 | 3708 | 33356 | 712 | 5365 | ] |
