Detailed information of deep learning profile BP000465.1

This page shows detailed deep learning-derived predictions and motifs for FOXA1 in liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000465.1
Cell line/tissue: liver
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0148.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR324RCI
Model: BPNet

Contribution weight matrix (CWM)

A [ -9.43e-05 1.74e-02 -1.31e-06 -2.59e-05 6.69e-07 7.24e-02 6.33e-05 9.05e-03 -9.49e-04 1.19e-02 ]
C [ -2.75e-05 -3.04e-05 -1.70e-05 2.15e-06 7.98e-06 6.97e-07 4.15e-02 -9.08e-04 2.58e-03 -9.41e-04 ]
G [ -4.88e-05 3.59e-02 1.34e-06 9.82e-04 9.18e-03 9.12e-04 -9.14e-06 -1.43e-04 -1.62e-03 -5.35e-04 ]
T [ 5.26e-02 7.93e-06 7.65e-02 5.24e-02 4.22e-02 -1.40e-05 3.50e-03 7.46e-03 1.33e-02 5.00e-03 ]

Frequency matrix

A [ 2313 16042 307 374 1174 42445 3044 16946 7462 19540 ]
C [ 848 425 93 432 644 220 32720 8541 11506 3703 ]
G [ 896 28654 124 4307 12027 3283 557 1019 6638 5294 ]
T [ 42147 1083 45680 41091 32358 256 9884 19699 20598 17667 ]

11 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000233.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens
BP000287.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens
BP000429.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens
BP000621.1 FOXA1 ENCSR000BKY T47D Homo sapiens
BP000807.1 FOXA1 ENCSR000BRD A549 Homo sapiens
BP000816.1 FOXA1 ENCSR819LHG K562 Homo sapiens
BP000880.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens
BP000958.1 FOXA1 ENCSR735KEY liver Homo sapiens
BP001033.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens
BP001046.1 FOXA1 ENCSR000BPX A549 Homo sapiens
Showing 10 profiles of page 1 from 2 pages