Detailed information of deep learning profile BP000483.1

This page shows detailed deep learning-derived predictions and motifs for GATA2 in SH-SY5Y using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GATA2
Model ID: BP000483.1
Cell line/tissue: SH-SY5Y
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Best Match(es): MA0036.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCSR000EYB
Model: BPNet

Contribution weight matrix (CWM)

A [ -1.45e-04 5.09e-06 1.48e-05 1.10e-01 0.00e+00 0.00e+00 2.40e-03 -7.13e-04 ]
C [ 1.39e-02 8.91e-05 -7.77e-06 0.00e+00 0.00e+00 1.01e-01 -1.43e-05 3.42e-03 ]
G [ 3.18e-03 7.57e-07 1.92e-05 0.00e+00 0.00e+00 0.00e+00 2.40e-04 8.87e-03 ]
T [ -1.04e-03 3.19e-02 3.95e-02 0.00e+00 1.02e-01 2.27e-06 1.45e-02 -2.20e-03 ]

Frequency matrix

A [ 40631 40449 52471 188551 204 213 62264 32583 ]
C [ 54221 38649 29051 28 17 185882 7195 46590 ]
G [ 43954 21171 19671 414 115 185 7212 70058 ]
T [ 50207 88744 87821 20 188677 2733 112343 39782 ]

Alternative motif patterns (AMPs)

6 profiles found for the same TF (GATA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000642.1 GATA2 ENCSR257RKC K562 Homo sapiens
BP000745.1 GATA2 ENCSR897LDT HepG2 Homo sapiens
BP000755.1 GATA2 ENCSR000EWG K562 Homo sapiens
BP000812.1 GATA2 ENCSR706VOO SK-N-SH Homo sapiens
BP001047.1 GATA2 ENCSR000DKA K562 Homo sapiens
BP001194.1 GATA2 ENCSR000BKM K562 Homo sapiens
Showing 6 profiles of page 1 from 1 pages
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