This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000492.1 |
| Cell line/tissue: | GM12878 |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000DRZ |
| Model: | BPNet |
| A [ | -2.19e-03 | -1.38e-03 | 2.52e-02 | -1.78e-03 | -5.81e-03 | 8.28e-02 | -4.45e-04 | 1.20e-02 | -4.99e-03 | -1.12e-03 | -2.38e-03 | -3.54e-03 | 6.97e-03 | -3.28e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.04e-01 | 1.90e-01 | 6.34e-04 | 6.51e-02 | 1.55e-02 | -5.05e-04 | -9.19e-05 | -1.87e-04 | -3.15e-04 | -1.46e-04 | 1.39e-03 | 8.63e-02 | 7.06e-04 | 3.30e-02 | ] |
| G [ | -1.95e-03 | -4.58e-04 | 6.11e-03 | 1.23e-02 | -2.75e-03 | 8.02e-04 | 1.92e-01 | 8.50e-02 | 6.56e-02 | 1.78e-01 | 1.12e-01 | 4.12e-04 | 5.46e-02 | 9.31e-03 | ] |
| T [ | -3.27e-03 | -8.50e-04 | -6.39e-03 | -2.29e-03 | 2.43e-02 | -2.54e-03 | -3.53e-04 | -6.95e-04 | 3.63e-03 | -9.97e-04 | -1.17e-03 | -3.90e-03 | -3.78e-03 | -8.45e-04 | ] |
| A [ | 4478 | 920 | 32605 | 3059 | 7578 | 41388 | 323 | 17344 | 3181 | 917 | 2198 | 8051 | 19054 | 5612 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 39902 | 48980 | 2522 | 28492 | 19730 | 1459 | 70 | 510 | 1966 | 575 | 3661 | 34515 | 4293 | 23826 | ] |
| G [ | 2973 | 202 | 7321 | 17233 | 4164 | 4319 | 49771 | 31738 | 29409 | 47952 | 40008 | 2955 | 23614 | 14876 | ] |
| T [ | 3001 | 252 | 7905 | 1570 | 18882 | 3188 | 190 | 762 | 15799 | 910 | 4488 | 4834 | 3393 | 6040 | ] |