This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP000516.1 |
| Cell line/tissue: | GM12878 |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000DZN |
| Model: | BPNet |
| A [ | -2.19e-03 | -1.69e-03 | 2.47e-02 | -1.92e-03 | -4.88e-03 | 7.86e-02 | -4.92e-04 | 1.85e-02 | -6.47e-03 | -1.11e-03 | -2.06e-03 | -5.96e-03 | 1.07e-02 | -3.72e-03 | -3.91e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 9.10e-02 | 1.85e-01 | -1.91e-04 | 5.68e-02 | 1.61e-02 | -5.02e-04 | -1.42e-04 | -2.06e-04 | -4.35e-04 | -8.88e-05 | -7.78e-04 | 1.13e-01 | -1.17e-03 | 4.37e-02 | 1.59e-02 | ] |
| G [ | -2.47e-03 | -6.44e-04 | 7.93e-03 | 1.19e-02 | -2.48e-03 | 1.12e-03 | 1.94e-01 | 9.21e-02 | 5.99e-02 | 2.01e-01 | 1.32e-01 | -1.61e-03 | 6.94e-02 | 1.31e-02 | -2.21e-03 | ] |
| T [ | -3.63e-03 | -1.17e-03 | -6.16e-03 | -2.70e-03 | 1.91e-02 | -2.57e-03 | -5.35e-04 | -6.23e-04 | 9.39e-03 | -7.46e-04 | -2.79e-04 | -3.45e-03 | -4.24e-03 | -1.64e-03 | 1.87e-02 | ] |
| A [ | 4415 | 1330 | 27252 | 2931 | 7290 | 33700 | 517 | 15136 | 3122 | 485 | 199 | 5445 | 17891 | 4053 | 5756 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 31865 | 40530 | 2375 | 22970 | 16150 | 1435 | 135 | 240 | 1597 | 83 | 201 | 32724 | 1617 | 21267 | 15111 | ] |
| G [ | 3159 | 353 | 6324 | 15053 | 4360 | 4194 | 41625 | 26922 | 21835 | 41659 | 40584 | 1059 | 21125 | 13311 | 4436 | ] |
| T [ | 3159 | 385 | 6647 | 1644 | 14798 | 3269 | 321 | 300 | 16044 | 371 | 1613 | 3370 | 1965 | 3967 | 17295 | ] |
