Detailed information of deep learning profile BP000522.1

This page shows detailed deep learning-derived predictions and motifs for CUX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CUX1
Model ID: BP000522.1
Cell line/tissue: MCF-7
Class: Homeo domain factors
Family: HD-CUT
Best Match(es): MA0754.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P31271  
Source: ENCSR017CEO
Model: BPNet

Contribution weight matrix (CWM)

A [ -2.00e-03 3.10e-03 3.63e-02 -4.01e-06 6.31e-06 1.48e-02 4.22e-02 9.33e-07 7.39e-03 ]
C [ 2.30e-04 -3.92e-04 -5.34e-05 8.07e-05 4.84e-02 -5.07e-05 -8.60e-07 7.38e-06 6.70e-04 ]
G [ -5.65e-04 5.66e-03 2.47e-05 -7.17e-06 4.86e-06 6.65e-03 2.41e-05 -8.48e-06 -8.03e-04 ]
T [ 6.31e-03 -3.47e-04 -2.10e-04 4.62e-02 2.89e-05 -2.37e-04 3.83e-06 4.62e-02 -2.11e-04 ]

Frequency matrix

A [ 9573 15316 32886 694 489 25269 31337 1943 13808 ]
C [ 6140 3077 213 1056 33760 1292 525 997 7662 ]
G [ 4472 10136 838 791 128 4968 2456 370 5727 ]
T [ 15114 6770 1362 32758 922 3770 981 31989 8102 ]

Alternative motif patterns (AMPs)

3 profiles found for the same TF (CUX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000433.1 CUX1 ENCSR000DYR GM12878 Homo sapiens
BP000446.1 CUX1 ENCSR000EFO K562 Homo sapiens
BP000567.1 CUX1 ENCSR178NTX K562 Homo sapiens
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